Bioconductor Gene symbol

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3.3k

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deseq2 dataframe ensembl gene id gene symbol entrezid

5.1 years ago jason.williams ▴ 10

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2.4k

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deseq2 gene symbol ensembl

updated 6.2 years ago by Michael Love 43k • written 6.2 years ago by thkapell ▴ 10

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1.1k

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GRanges gene symbol IdeoViz

6.2 years ago Arman Shahrisa ▴ 20

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1.9k

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dmrcate gene symbol coordinate

6.5 years ago 574233829 • 0

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1.7k

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transcript_id gene symbol

updated 9.4 years ago by James W. MacDonald 67k • written 9.4 years ago by Jo ▴ 30

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14k

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biomart gene symbol

updated 9.5 years ago by Diego Diez ▴ 760 • written 9.7 years ago by chang02_23 ▴ 30

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3.9k

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Pathview KEGG annotation gene symbol visualization

updated 9.6 years ago by Luo Weijun ★ 1.6k • written 9.6 years ago by alakatos ▴ 130

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3.3k

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biomart homo.sapiens genome regions gene symbol

updated 9.7 years ago by Hervé Pagès 16k • written 9.7 years ago by NS ▴ 60

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24k

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tcga cnv gene symbol coordinate

updated 2.2 years ago by James W. MacDonald 67k • written 9.7 years ago by NS ▴ 60

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3.0k

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probe filter subset gene symbol affy

9.9 years ago alakatos ▴ 130

10 results • Page 1 of 1

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Comment: Problems with oarfish + tximport + swish by Michael Love 43k

Great thanks for posting the issue and sticking with it Annaleigh

Comment: Problems with oarfish + tximport + swish by brown.annaleigh • 0

Awesome possum! Update works!! Thank you so much for the help and guidance!

Comment: Postdoctoral Researcher in Spatial Gene Regulatory Networks underlying Stomatal by iqratechnology4 • 0

Iqra Technology is IT Solutions and Services Company. We are salesforce and Microsoft partner company. https://iqratechnology.com/

Comment: Differential expression of protein coding ENSGs (Ensembl IDs) | When to biomaRt? by James W. MacDonald 67k

> BTW, shouldn't you be using keep.lib.sizes = F and re-do the calcNormFactors() after filtering of the dglst low-expression ENSGs, as Gord…

Comment: Problems with oarfish + tximport + swish by Michael Love 43k

Let me see if I can add some code to tximeta to cover this case. I've added an argument `skipRanges` in devel branch which should allow: …

Votes

Answer: Error in download.file for TCGAutils::symbolsToRanges

Answer: Differential expression of protein coding ENSGs (Ensembl IDs) | When to biomaRt?

Answer: Limma Interaction Effect with Covariates

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